PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03107.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 1167aa    MW: 129597 Da    PI: 9.8826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03107.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-086398340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e+++da +++G++ W+++a+ +  +Rt +++
        PK03107.1 63 QWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRTVEMV 98
                     6*****************99.*********.***9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-959106IPR009057Homeodomain-like
PROSITE profilePS512939.08659112IPR017884SANT domain
SMARTSM007170.00460108IPR001005SANT/Myb domain
PfamPF002498.5E-76398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-56398IPR009057Homeodomain-like
CDDcd001673.88E-56498No hitNo description
SMARTSM011351.2E-57641742IPR033471DIRP domain
PfamPF065841.9E-33641741IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1167 aa     Download sequence    Send to blast
MAPTKKSRVN KRYGSAISYS PEKEVGNSAK NKQRGSISFS PDGGNSNKSL QRKKKLSDKL  60
GSQWSKGELE RFYDAYRKYG KDWRKVAAAV RNRTVEMVEA LYSMNRAYLS LPEGTASVVG  120
LIAMMTDHYN VLEGSDSDQE SNDGSGISRK LPNRKRGRDN FNTSKDLFQS HSVASTDGCL  180
SLLKRKRSDG SQPRVVGKRT PRFPVSYSHK RDYRENQMSP NRKGKKAEND NDDAHVAALA  240
LTEASQRVGS PQVSTPYKHI SSSPAQSWER LALSSQRLRD TSVDDDWFEG SVGSRGAENG  300
DYGKDTSSLM AMEGVGTVEV HQKGKKFYGK KEKVEDDDGG EACSGTEEGK SISGLKGKIG  360
VEFSNAKVER VSPQSQRKKS KKLFFGDESS AIDALQTLAN LSLMMPPCTV ESESSVQLKE  420
ERTTLDAEEK SSVPEATSQV RNKNKLSGAK QKAPPTISKK STLGRDANGD IINDSTTGQL  480
LSENKLLKRR RKSSIPKMSK VEARLDAILK GTFKTEVICE EESKPVIKGK RSSQSSTPSK  540
QWKSVGSSEG SLSGEFKRTG SGTDLAVSTT QVPAASQVNL PTKQRSKRKM YLPQTLPTKD  600
IKSTQNIVKR KVNKNFTLPE EKLSCFLSST MVRRWCTFEW FYSAIDYPWF AKREFEEYLN  660
HVGLGHIPRL TRVEWGVIRS SLGKPRRFSE LFLREERKKL KQYRESVREH YTELRNGVRE  720
GLPTDLARPL TVGQRVIAIH PKTREVHDGS VLTVDHDKCR IQFDHPDIGV EFVMDVDCMP  780
SNPMENMPES LRRQNSTIDN FSLTSKEPLP NGNLNFGGPL MFASSGHMEK GPTSINTLGK  840
HGKGDITHAV SHMKAAAIDI VSSTQPIAYS QSLIVENNQA READIRALSE LTRALDKKEA  900
LLMELRKTNS EILENQNNGD YSLKDCEMFK KHYATVLVQL NEASSQVSSA LHDLRQRNTH  960
PGNVLFPGPK IPINSTTHSN VPSSFDNFSI SQDSASNLIE IVKGSTIKAQ SMVDAAIQAF  1020
SLCKEGEDAY LKIREALDSM DNKLMTSESR ALTNKPHEQV NGTSVHRYSL IKSEPVITGD  1080
SSASNLRTDS DKSEAKVPSG IITSCVASLL MIQTCTERQY PPSEVAQILD TAVTRLYPLS  1140
SQNIQIYREI QSYMGRIKTQ ILALVPT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875083.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBLM5WJB80.0M5WJB8_PRUPE; Uncharacterized protein
STRINGGLYMA10G29481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding